Unity 2017.1 teamwork does not work

Hey,

just went for linux, cause I broke my windows ;P And yeah, always prefered linux, but Unity and some games hang me there. Decided to change.
Issue is, I am working with 4-5 more ppl as a hobby, making game. When I started project on linux.. damn many files went updated. All project settings, almost all prefabs changed. How am I suppose to work with Windows ppl? Is it possible, or it's not?
I am not able to commit my changes, cause I do not know what is changed tbh.

With the version of Unity, have not much more issues. Sometimes it crashes but I know it experimental, so I understand. But what I do not understand is changing binary files, so it's not possible to work with other systems.