Running script to turn off segment scale compensation in Maya 2017 messes up my model

Hello! I'm trying to export my rigged model of a flower from Maya 2017 to Unity 2018.1.1f1. It looks like this:

When I exported it as fbx to unity it looked like this:

I figured this was because of the segment scale compensation from Maya so I ran this script to turn it off for all the joints in Maya:
{
string $selected[] = `ls -type joint`;
select -r $selected;
}

string $sel[] = `ls -sl`;
string $singleJnt;
for ($singleJnt in $sel)
{
setAttr ($singleJnt + ".segmentScaleCompensate") 0;
}

But now in Maya it looks like the messed up version as well.
Is it possible to turn off segment scale compensate in Maya and preserve my model? Or do I just have to redo it....

 

Since noone replied...

Sadly I can't help (would be rather late as well), but I have pretty much the same question... Maybe asking this question again will make someone answer who might know? Or maybe you fond a solution by yourself?

I would be so glad if someone could help, because it's awful to have to do a lot of rigging again...