Question on proper file structure for script package submission

I've got a script package that I would like to submit to the asset store pretty soon. Most of it is written in C# but I've also included some javascript samples calling my C# classes. In order to achieve this, I've had to put my C# scripts in my Assets\Plugin folder so that the C# scripts are compiled before the javascript ones. This part works now.

I want to make sure that I retain this folder structure in the future asset store package I will submit. However, in the instruction PDF and tutorial video, it is stated that I should put all my stuff in a root folder named the same as my package, with an AssetStore subfolder inside it. Can i still have my scripts in a Plugin folder outside of this root folder with my scripts in it? Or what is the correct file structure for that? I'm confused

Thanks in advance!

 

Anyone? Is something not clear?