Making sure all file changes are cached / converted

Is there a way to make sure all files that have been modified to be picked up by Unity before a call to BuildPipeline.BuildPlayer executes?

I have a case where I need to modify a file that's used depending on a custom build option from the menus, unfortunately, this means I have to do two builds as Unity doesn't see the file changes in time for the first build (caching?)

So is there any functions / options that can be called to make sure all files are in sync before a build is actually invoked?

 

try

AssetDatabase.Refresh()

 

That did the trick, well, with AssetDatabase.Save() beforehand as well as I was changing the PlayerSettings.

Thanks.