GitHub - pulling repository to my laptop causing prefabs to go missing

Not sure if this is the correct area to post this, but as of today, I've noticed that pulling that latest build of my project from GitHub onto my laptop is causing a couple of prefabs to go missing. Everything's perfectly fine on my desktop though. Specifically, my Cinemachine camera prefab and a pixel sprite checkpoint keep going missing. I've tried a couple of times to create a new branch, but once it's pulled onto my laptop, those two prefabs are gone. I even tried to make sure that Meta Files are visible. Could this be a bug? Or am I missing something?