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Just tried again, and now it's working! :-)
Same problem here :(
This issue still exists in Unity3D v3.5.6f4. Adding an empty OnEnable() method solved the problem.
A quick google found this: http://forum.unity3d.com/threads/36468-Select-Debug-Mode
Facing the same problem here. Been searching for an answer, but found nothing.
Tried using Perl and Batch, but to no avail. The...